species:   Artha
pid:       MI0005402
parent:    ath-MIR846
paralog:   
locus:     1:22577375-22577733
matures:   ['UUGAAUUGAAGUGCUUGAAUU', 'UUCAAGGACUUCUAUUCAGAA']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 1:22577375-22577733

0 out of bounds
607 alignments
607 proper strand
522 stranded perfect matches

                                                   ***********************                                                                                                                                                                                                                   ***********************                                                   
CAAACAUCUUGAAUCCGUUGAGGUUGAUCACGAUGAUGCCACAUCCGGUUUCAUUCAAGGACUUCUAUUCAGAACAAACUUCAUGAUUUCUGAACUAAUUGGAUAUGAUAAAUGGUAACAAGUAUUCACUUGCAUUCAAGGGACAAAAAAUCAUUGGGAUAUAUGAUUAUGACAAACACGAUUGGAAGCUGAAUGGUUGCGGGAGGCAAGCAGUGGGAUAAUGAUCUGCAAGUGGAAACUUCUUACUUUUAUCAUAUCCCAUCAGCUCGAAAGUCUUGAUGUUAGUUUUGAAUUGAAGUGCUUGAAUUACACCAGAUUUAUUGUGCUCGUGUAUCCCGGUAAAUUCGACUAAUGACCAA
....(((.(((((((((..((...(((.((((((((......(((.(((...(((((((.(((((.(((((((((.(((.(((.(((((.(((.((.((.((((((((((((.(((((.((((.((((((((((..............((((((........))))))...........(((((....((.(.((.((((.....)))).)).).))....))))))))))))))).)))).))))))))))))))))).)).)).))).))))).))).))).))))))))).))))).)))))))...))).))))))))))).)))....)).)))...))))))...))).....
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=439 c
-----------------------------------------------------UUCAAGGACUUCUAUUCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=5 c*
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=439 ma
-----------------------------------------------------UUCAAGGACUUCUAUUCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=5 ma*

---------------------------------------------------CAUUCAAGGACUUCUAUUCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=11 
---------------------------------------------------CAUUCAAGGACUUCUAUUCAa----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=4 
---------------------------------------------------CAUUCgAGGACUUCUAUUCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
----------------------------------------------------AUUCAAGGACUUCUAUUCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=9 
-----------------------------------------------------UUCAAGGACUUCUA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=14 a=1 
-----------------------------------------------------UUCAAGGACUUCUAUUCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=2 
-----------------------------------------------------UUCAAGGACUUCUAUUCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=27 
-----------------------------------------------------UUCAAGGACcUCUAUUCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
-----------------------------------------------------UUuAAGGACUUCUAUUCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-----------------------------------------------------UUCAgGGACUUCUAUUCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-----------------------------------------------------UUCAAGGACUUCUAUUCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=5 (c*,ma*)
-----------------------------------------------------UUCAAGGACUUCUAUUCAGAAu-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 
-----------------------------------------------------UUCAAGGACUUCUAUUCAGAuC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 
------------------------------------------------------------------------------------------------AgUUGGAUAUGAUAAAUGGUA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
------------------------------------------------------------------------------------------------AAUUGGAUAUGAUAAAUGGUA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGUUUUGAAUUGAAGUuC---------------------------------------------------------- l=20 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGUUUUGAAUUGAAGUGCUU-------------------------------------------------------- l=21 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGAAUUGAAGUGCUUGAAU---------------------------------------------------- l=21 a=11 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGgAUUGAAGUGCUUGAAU---------------------------------------------------- l=21 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGAAUUGAAGUGCUUGAAc---------------------------------------------------- l=21 a=2 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGAgUUGAAGUGCUUGAAU---------------------------------------------------- l=21 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=22 a=5 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUG------------------------------------------------------- l=17 a=6 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAU---------------------------------------------------- l=20 a=3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=439 (c,ma)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAUa--------------------------------------------------- l=21 a=3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAUc--------------------------------------------------- l=21 a=35 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGgAGUGCUUGAAUU--------------------------------------------------- l=21 a=3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aUGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAcUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UcGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAcUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAgUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCcUGAAUU--------------------------------------------------- l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGaGCUUGAAUU--------------------------------------------------- l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UaGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGgAUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UgGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUcGAAUU--------------------------------------------------- l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAcU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAuGUGCUUGAAUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAgUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cUGAAUUGAAGUGCUUGAAUU--------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGAAUUGAAGUGCUUGAAUUu-------------------------------------------------- l=22 a=4 

mb-01111
ax-1110111
ku-11
ss-111101111111
fn-111
